Environmental detection of Burkholderia pseudomallei and associated melioidosis risk: a molecular detection and case-control cohort study
Lay summary
Melioidosis is a neglected tropical disease caused by the bacterium Burkholderia pseudomallei, which can be acquired from the environment through contact with soil or water. Type 2 diabetes is a major risk factor in acquiring the infection, though some past studies showed that some diabetes medications prevent deaths from melioidosis. However, although metformin is the most common treatment for diabetes, we don’t know whether it specifically prevents deaths from melioidosis.
To answer this question, we collected data from diabetes patients infected with melioidosis in northeast Thailand, an endemic area for melioidosis. We show that metformin is indeed associated with a decreased risk of death from melioidosis, more so than other diabetes medications. Furthermore, we built a classification tree model, a type of machine learning model, to find the best way to predict whether a patient dies based on their properties. The model identifies metformin usage as the most important factor in helping predict whether a melioidosis patient dies, alongside blood sugar levels and age.
To explain why metformin helps melioidosis patients survive, we investigated the patients’ immune response. We observe that patients on metformin had a greater T-cell response, allowing them to target Burkholderia pseudomallei antigens. These patients also had higher levels of proteins in the blood that allow communication between immune cells to help them defend against bacteria.
Knowing that metformin helps melioidosis patients survive is important because this emphasises why we should help diabetes patients stay on medication as much as possible.
My role
I curated the clinical data to allow the statistical analysis and building of machine learning models.